CellProfiler vs Fiji
Side-by-side comparison for macOS
CellProfiler
8.0Open-source application for biological image analysis
Fiji
8.0Open-source image processing package
| Metric | CellProfiler | Fiji |
|---|---|---|
| Category | Science | Science |
| AI Score | 8.0 | 8.0 |
| 30-day Installs | 8 | 95 |
| 90-day Installs | 20 | 376 |
| 365-day Installs | 253 | 1.1K |
| Version | 4.2.8 | 20260423-0417 |
| Auto-updates | No | Yes |
| Deprecated | Yes | No |
| GitHub Stars | 1.1K | 936 |
| GitHub Forks | 417 | 253 |
| Open Issues | 331 | 133 |
| License | NOASSERTION | GPL-3.0 |
| Language | Python | Shell |
| Last GitHub Commit | 1mo ago | 4mo ago |
| First Seen | Aug 9, 2023 | Aug 9, 2023 |
Reviews
CellProfiler
CellProfiler is a powerful, open-source application for biological image analysis, offering advanced tools for researchers to process and analyze microscopy images. Its extensive features and active development make it a valuable tool in the scientific community.
CellProfiler is software for analyzing and processing biological images, particularly from microscopy.
Pros
- + Open-source and widely used in research
- + Cross-platform compatibility
- + Extensive processing tools for biological images
- + Actively maintained with regular updates
Cons
- - No auto-update feature
- - Installation may be challenging
- - High number of open issues
Fiji
Fiji is a comprehensive open-source image processing tool designed for scientific image analysis, particularly in microscopy and bioimage processing. It offers a wide range of features and plugins, making it an essential tool for researchers and scientists in various fields.
Fiji is an advanced image processing application used for scientific image analysis, microscopy, and bioimage processing.
Pros
- + Open-source and highly customizable with a wide range of plugins.
- + Comprehensive set of tools for scientific image analysis.
- + Active development and strong community support.
Cons
- - Steep learning curve for non-experts.
- - Historically, there have been platform-specific issues, though these are typically resolved promptly.